SNP Profiles of CC 137 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
1._CC_137	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
2._CC_137	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
3._CC_137	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
4._GC-01-134-7-11	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
5._GC-01-134-7-11	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
6._GC-01-134-7-11	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
7._GC-01-134-7-11	CT	AG	CG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
8._RUQ_1637	_	AG	CG	CT	_	_	_	TT	_	_	_	_	CT	AG
9._RUQ_1637	CT	AG	_	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG
10._CC_137	_	_	GG	CT	TT	AA	_	TT	CT	CT	AA	AA	CT	AG
11._RUQ_1637	_	_	CG	_	_	_	_	TT	_	CT	_	AA	_	AG
12._CC_137	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
13._GC-01-134-7-11	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
14._RUQ_1637	AG	AG	CC	AG	AA	AA	GG	AA	_	_	AA	AA	AG	AG
15._MITC-000809	AG	AG	CC	AG	AA	AA	GG	AA	_	_	AA	AA	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
1._CC_137	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
2._CC_137	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
3._CC_137	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
4._GC-01-134-7-11	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
5._GC-01-134-7-11	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
6._GC-01-134-7-11	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
7._GC-01-134-7-11	CT	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC
8._RUQ_1637	_	_	_	_	CC	GG	GG	_	CT	CC	CC	TT	-	CC
9._RUQ_1637	CT	AA	GG	TT	CC	GG	GG	AG	CT	CC	CC	TT	CT	CC
10._CC_137	CT	AA	GG	TT	CC	GG	GG	AG	CT	_	CC	TT	CT	CC
11._RUQ_1637	_	_	_	_	_	GG	GG	AG	_	CC	CC	_	_	AC
12._CC_137	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
13._GC-01-134-7-11	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
14._RUQ_1637	AG	AA	GG	AA	GG	CC	CC	_	AG	CC	CC	AA	_	CC
15._MITC-000809	AG	AA	GG	AA	GG	CC	CC	_	AG	CC	CC	AA	_	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
1._CC_137	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
2._CC_137	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
3._CC_137	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
4._GC-01-134-7-11	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
5._GC-01-134-7-11	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
6._GC-01-134-7-11	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
7._GC-01-134-7-11	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
8._RUQ_1637	AG	_	AA	CT	AA	CC	AC	CT	GT	CC	_	X_X	X_X	X_X
9._RUQ_1637	AG	GG	AA	CT	AA	CC	AC	CT	GT	CC	GG	X_X	X_X	X_X
10._CC_137	AG	GG	_	CT	AA	_	AC	_	GT	CC	GG	X_X	X_X	X_X
11._RUQ_1637	_	_	_	_	AA	_	_	_	_	CC	_	X_X	X_X	X_X
12._CC_137	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	GG	X_X	X_X	X_X
13._GC-01-134-7-11	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	GG	X_X	X_X	X_X
14._RUQ_1637	_	GG	AA	AG	AA	GG	AC	AG	AC	CC	GG	X_X	X_X	X_X
15._MITC-000809	_	GG	AA	AG	AA	GG	AC	AG	AC	CC	GG	X_X	X_X	X_X

Input profile: CC_137

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Mars Center for Cocoa Science, Brazil

Location: 1711 1

Dapeng Zhang, 2016

1._CC_137

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 6

Dapeng Zhang, 2016

2._CC_137

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 5

Dapeng Zhang, 2016

3._CC_137

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._CC_137 GC-01-134-7-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._CC_137 GC-01-134-7-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._CC_137 GC-01-134-7-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._CC_137 GC-01-134-7-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._CC_137 RUQ_1637

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._CC_137 RUQ_1637

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._CC_137

96.9 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

11._CC_137 RUQ_1637

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._CC_137

70.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 4

Dapeng Zhang, 2016

13._CC_137 GC-01-134-7-11

70.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._CC_137 RUQ_1637

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._CC_137 MITC-000809

48.5 %
34 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP25